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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM6A, lysine (K)-specific demethylase 6A
Sequence ID:NM_021140
RefSeqGene ID:NG_016260
Entrez Gene ID:7403
Ensembl ID:ENSG00000147050

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 44732470 - 44971492

 Exon Info From UCSC:
NM_021140

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939713Full LengthBC093868ubiquitously transcribed tetratricopeptide repeat, X chromosome
8322433Full LengthBC113381ubiquitously transcribed tetratricopeptide repeat, X chromosome
9051774Full LengthBC143272ubiquitously transcribed tetratricopeptide repeat, X chromosome
9051779Full LengthBC143277ubiquitously transcribed tetratricopeptide repeat, X chromosome
9051780Full LengthBC143278ubiquitously transcribed tetratricopeptide repeat, X chromosome

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066963  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021140 NP_066963 O15550 TPR_1
JmjC

Related Sequences

 
mRNAGenPeptSwissProt
AF000992 AAC51839 O15550
AF000993 AAC51840 O15550
BC093868 AAH93868 O15550
BC113381 AAI13382 O15550
BC143272 AAI43273 B7ZKN1
BC143277 AAI43278 B7ZKN5
BC143278 AAI43279 B7ZKN6
DQ062676 AAZ06655 E1U0S5
DQ062677 AAZ06656 E1U0S6
DQ062678 AAZ06657 E1U0S7
EU026283 ABV82614 F4MHJ5
EU026291 ABV82622 F4MHK3
AB208795 BAD92032 Q59HG3
AK294456 BAG57692 B4DG81
AK303430 BAG64480 B4E0L8
AK304114 BAG65015 B4E253
AL831996 CAD89904 Q86TD1
BX640694 CAE45817 Q6N053
CR749602 CAH18397 Q68D33

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM6A NP_066963 M.musculus Kdm6a 22289 Gene Info NP_033509 97
R.norvegicus Kdm6a 100310845   XP_002730231 96
D.melanogaster Utx 34377   NP_001188773 62
A.gambiae AgaP_AGAP008509 1277464   XP_316935 59
C.elegans utx-1 181110   NP_509450 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)