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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APOD, apolipoprotein D
Sequence ID:NM_001647
Entrez Gene ID:347
Ensembl ID:ENSG00000189058

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q26.2-qterMitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 195297461 - 195310892

NM_001647 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19452195295572195296005
453541195298147195298235
542663195300720195300841
664820195306209195306365
8211148195310748195311075

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050012Full LengthBC007402apolipoprotein D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001638  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001647 NP_001638 P05090 Lipocalin
Lipocalin_2

Related Sequences

 
mRNAGenPeptSwissProt
S80440 AAB35919 P05090
J02611 AAB59517 P05090
BC007402 AAH07402 P05090
BT019860 AAV38663 P05090
BT019861 AAV38664 P05090
DQ892668 ABM83594  
DQ896124 ABM87123  
AK312090 BAG35026 P05090
AK294523 BAG57734 B4DGC3
CR456838 CAG33119 P05090
CR541773 CAG46572 P05090

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOD NP_001638 M.musculus Apod 11815 Gene Info NP_031496 73
R.norvegicus Apod 25239   NP_036909 73
A.gambiae AgaP_AGAP009281 1280247   XP_320076 45
D.melanogaster NLaz 33324   NP_787960 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)