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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLTA, clathrin, light chain A
Sequence ID:NM_001076677
NM_001184760
NM_001184761
NM_001184762
NM_001833
NM_007096
Entrez Gene ID:1211
Ensembl ID:ENSG00000122705

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 36190959 - 36212056

 Exon Info From UCSC:
NM_001076677
NM_001184760
NM_001184761
NM_001184762
NM_001833
NM_007096

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823495Full LengthBC019287clathrin, light chain (Lca)
3944942Full LengthBC009201clathrin, light chain (Lca)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001824  NP_009027  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001076677 NP_001070145    
NM_001184760 NP_001171689    
NM_001184761 NP_001171690    
NM_001184762 NP_001171691    
NM_001833 NP_001824   Clathrin_lg_ch
NM_007096 NP_009027 P09496 Clathrin_lg_ch

Related Sequences

 
mRNAGenPeptSwissProt
M20471 AAA51817 P09496
M20472 AAA59505 P09496
BC009201 AAH09201 P09496
BC019287 AAH19287 P09496
BT007170 AAP35834 P09496
DQ270158 ABB76683 P09496
AK291078 BAF83767 P09496
AK295692 BAG58543 P09496

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLTA NP_001824 M.musculus Clta 12757 Gene Info NP_001073855 99
R.norvegicus Clta 83800   NP_114180 98
A.gambiae AgaP_AGAP010608 1275332   XP_558141 45
D.melanogaster Clc 40221   NP_001163480 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)