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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SIGMAR1, Sigma non-opioid intracellular receptor 1
Sequence ID:NM_005866
NM_147157
RefSeqGene ID:NG_029945
Entrez Gene ID:10280
Ensembl ID:ENSG00000147955

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 34635628 - 34637694

 Exon Info From UCSC:
NM_005866
NM_147157

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3529352Full LengthBC004899sigma non-opioid intracellular receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_671513  NP_005857  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005866 NP_005857 Q99720 ERG2_Sigma1R
NM_147157 NP_671513   ERG2_Sigma1R

Related Sequences

 
mRNAGenPeptSwissProt
U75283 AAB50402 Q99720
U79528 AAB51238 Q99720
AF226604 AAF64280 Q99720
BC004899 AAH04899 Q99720
BC007839 AAH07839 Q99720
AY633611 AAV33304 Q99720
DQ644568 ABG29111 Q99720
DQ647702 ABG36559 Q99720
DQ656583 ABG46369 Q99720
DQ892881 ABM83807  
DQ896130 ABM87129  
AK098451 BAC05307 Q99720
AK222899 BAD96619 Q99720
AK291092 BAF83781 A2A3U5
AK299130 BAG61183 B4DR71
CR457075 CAG33356 Q99720

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SIGMAR1 NP_005857 R.norvegicus Sigmar1 29336   NP_112258 93
M.musculus Sigmar1 18391 Gene Info NP_035144 91
S.cerevisiae ERG2 855242   NP_013929 42
S.pombe erg2 2541992   NP_593324 38
N.crassa NCU04156 3877419   XP_961312 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)