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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PUF60, Poly-U binding splicing factor 60KDa
Sequence ID:NM_001136033
NM_078480
NM_001271098
NM_001271100
NM_014281
NM_001271096
NM_001271099
NM_001271097
Entrez Gene ID:22827
Ensembl ID:ENSG00000179950

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 144898546 - 144911537

 Exon Info From UCSC:
NM_001136033
NM_078480
NM_014281

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3863660Full LengthBC011979poly-U binding splicing factor 60KDa
3877563Full LengthBC009734poly-U binding splicing factor 60KDa
4138778Full LengthBC008875poly-U binding splicing factor 60KDa
4155549Full LengthBC011265poly-U binding splicing factor 60KDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_510965  NP_055096  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001136033 NP_001129505    
NM_001271096 NP_001258025    
NM_001271097 NP_001258026    
NM_001271098 NP_001258027    
NM_001271099 NP_001258028    
NM_001271100 NP_001258029    
NM_014281 NP_055096   RRM_1
NM_078480 NP_510965 Q9UHX1 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U51586 AAB41656 Q9UHX1
AF190744 AAF05605 Q9UHX1
AF114818 AAF23589 Q9UHX1
AF217197 AAF27522 Q9UHX1
BC008875 AAH08875 Q9UHX1
BC009734 AAH09734 Q9UHX1
BC011265 AAH11265 Q9UHX1
BC011979 AAH11979 Q9UHX1
AK292373 BAF85062 Q9UHX1
CR457143 CAG33424 Q9UHX1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PUF60 NP_510965 M.musculus Puf60 67959 Gene Info NP_082640 99
R.norvegicus Puf60 84401   XP_343269 99
D.melanogaster pUf68 38173   NP_525123 61
A.gambiae AgaP_AGAP010553 1275288   XP_314526 60
C.elegans rnp-6 171922   NP_491176 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)