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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LY6E, lymphocyte antigen 6 complex, locus E
Sequence ID:NM_001127213
NM_002346
Entrez Gene ID:4061
Ensembl ID:ENSG00000160932

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 144102783 - 144103113

 Exon Info From UCSC:
NM_001127213
NM_002346

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40117169Full LengthBC119708lymphocyte antigen 6 complex, locus E
40117170Full LengthBC119709lymphocyte antigen 6 complex, locus E

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002337  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001127213 NP_001120685    
NM_002346 NP_002337 Q16553 UPAR_LY6

Related Sequences

 
mRNAGenPeptSwissProt
U42376 AAC50519 Q16553
U56145 AAC50616 Q16553
BC003392 AAH03392 Q7Z787
BC119708 AAI19709 Q16553
BC119709 AAI19710 Q16553
AK223074 BAD96794 Q53G57
AK311983 BAG34922 Q16553
Z68179 CAA92321 Q16553

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LY6E NP_001120685 R.norvegicus Ly6e 362934   NP_001017467 64
M.musculus Ly6e 17069 Gene Info NP_001157509 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)