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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COBRA1, cofactor of BRCA1
Sequence ID:NM_015456
Entrez Gene ID:25920
Ensembl ID:ENSG00000188986

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 140161408 - 140167991

 Exon Info From UCSC:
NM_015456

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3941719Full LengthBC011892cofactor of BRCA1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056271  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015456 NP_056271 Q8WX92 COBRA1

Related Sequences

 
mRNAGenPeptSwissProt
BC011892 AAH11892 Q8WX92
AF464935 AAL69965 Q8WX92
AB033008 BAA86496 Q8WX92
AK022651 BAB14157 Q8WX92
AK091056 BAG52272 Q8WX92
AL050280 CAB43381 Q8WX92
AM393289 CAL38167 Q8WX92

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COBRA1 NP_056271 R.norvegicus Cobra1 311796   NP_001101287 97
M.musculus Cobra1 58202 Gene Info NP_067368 96
A.gambiae AgaP_AGAP012109 1280567   XP_320419 55
D.melanogaster NELF-B 31681   NP_572402 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)