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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RAD23B, RAD23 homolog B (S. cerevisiae)
Sequence ID:NM_001244713
NM_001244724
NM_002874
Entrez Gene ID:5887
Ensembl ID:ENSG00000119318

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 110045560 - 110093173

Transcript StartTranscript EndChromosomal Start Chromosomal End
1433110045543110045975
434515110062421110062502
516595110064315110064394
596864110068659110068927
865920110073962110074017
9211048110081032110081159
10491184110084263110084398
11851312110086170110086297
13131483110087114110087284
14844129110091823110094468

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3906269Full LengthBC020973RAD23 homolog B (S. cerevisiae)
3906541IncompleteBC015805RAD23 homolog B (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002865  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244713 NP_001231642    
NM_001244724 NP_001231653    
NM_002874 NP_002865 P54727 ubiquitin
UBA

Related Sequences

 
mRNAGenPeptSwissProt
BC020973 AAH20973 P54727
AY313777 AAP81008 Q7Z5K8
DQ893726 ABM84652  
DQ890563 ABM92180  
D21090 BAA04652 P54727
AK223479 BAD97199 Q53F10
AK125226 BAG54170 P54727
AK293532 BAG57014 B4DEA3
AK297986 BAH12700 B7Z4W4
AK316189 BAH14560 B7ZA74

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAD23B NP_002865 R.norvegicus Rad23b 298012   NP_001020446 92
M.musculus Rad23b 19359 Gene Info NP_033037 91
N.crassa NCU07542 3875193   XP_959055 48
A.thaliana RAD23A 838188   NP_173070 45
S.pombe rhp23 2540481   NP_596231 45
A.gambiae AgaP_AGAP000733 1272322   XP_311268 44
A.thaliana RAD23B 844304   NP_001185439 44
S.cerevisiae RAD23 856674   NP_010877 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)