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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IRF5, interferon regulatory factor 5
Sequence ID:NM_001098627
NM_001098629
NM_001098630
NM_001242452
NM_032643
RefSeqGene ID:NG_012306
Entrez Gene ID:3663
Ensembl ID:ENSG00000128604

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
INFLAMMATORY BOWEL DISEASE 14 
SYSTEMIC LUPUS ERYTHEMATOSUS, 0 

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 128577990 - 128586996

 Exon Info From UCSC:
NM_001098627
NM_001098629
NM_001098630
NM_032643

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2963923Full LengthBC004139interferon regulatory factor 5
2963923Full LengthBC004201interferon regulatory factor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116032  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001098627 NP_001092097    
NM_001098629 NP_001092099    
NM_001098630 NP_001092100    
NM_001242452 NP_001229381    
NM_032643 NP_116032 Q13568 IRF

Related Sequences

 
mRNAGenPeptSwissProt
U51127 AAA96056 Q13568
BC004139 AAH04139 Q13568
BC004201 AAH04201 Q13568
AY504946 AAR90325 Q13568
AY504947 AAR90326 Q13568
AY693665 AAU12877 Q13568
AY693666 AAU12878 Q13568
AY693667 AAU12879 Q64GB0
AY693668 AAU12880 Q64GA9
AY693669 AAU12881 Q64GA8
DQ277633 ABB88960 Q13568
DQ277634 ABB88961 Q1A7B4
DQ893637 ABM84563  
EU176684 ABW03485  
EU258895 ABX54712 A9LSF3
EU258896 ABX54713 A9LSF4
EU258897 ABX54714 A9LSF4
EU258898 ABX54715 A9LSF6
JQ950681 AFN70752 I6ZU14
JQ950683 AFN70754 I6Z0J2
JQ950685 AFN70756 I6YQ35
AK297083 BAG59600 B4DLN8
AK293654 BAH11558 B7Z1M2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IRF5 NP_001092099 R.norvegicus Irf5 296953   NP_001100056 89
M.musculus Irf5 27056 Gene Info NP_036187 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta