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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM56, tripartite motif containing 56
Sequence ID:NM_030961
Entrez Gene ID:81844
Ensembl ID:ENSG00000169871

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100731876 - 100733887

NM_030961 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
167100728785100728851
68230100730286100730448
2313525100730592100733886

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2907142Full LengthBC005847tripartite motif-containing 56
5814702Full LengthBC048194tripartite motif-containing 56
3619509IncompleteBC011882tripartite motif-containing 56

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112223  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030961 NP_112223 Q9BRZ2 zf-C3HC4
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
BC005847 AAH05847 Q9BRZ2
BC011882 AAH11882 Q9BRZ2
BC048194 AAH48194 Q9BRZ2
EU446537 ABZ92066  
AK075255 BAC11500 Q9BRZ2
AL512757 CAC21676 Q9BRZ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM56 NP_112223 M.musculus Trim56 384309 Gene Info NP_958761 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)