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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSPB1, heat shock 27kDa protein 1
Sequence ID:NM_001540
RefSeqGene ID:NG_008995
Entrez Gene ID:3315
Ensembl ID:ENSG00000106211

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2F 
NEUROPATHY, DISTAL HEREDITARY MOTOR, TYPE IIB 

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 75932012 - 75933611

NM_001540 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15197593187475932392
5205837593311875933181
5848967593330075933612

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822325Full LengthBC000510heat shock 27kDa protein 1
3689220Full LengthBC012768heat shock 27kDa protein 1
3862626Full LengthBC012292heat shock 27kDa protein 1
5444848Full LengthBC073768heat shock 27kDa protein 1
3906970IncompleteBC014920heat shock 27kDa protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001531  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001540 NP_001531 P04792 HSP20

Related Sequences

 
mRNAGenPeptSwissProt
S74571 AAB20722 P04792
U90906 AAB51056 P04792
BC000510 AAH00510 P04792
BC012292 AAH12292 P04792
BC012768 AAH12768 P04792
BC014920 AAH14920 P04792
BC073768 AAH73768 P04792
BT019888 AAV38691 P04792
DQ891304 ABM82230  
DQ893349 ABM84275  
DQ894489 ABM85415  
DQ896669 ABM87668  
AB020027 BAB17232 P04792
AK311894 BAG34835 P04792
AK296890 BAG59449 B4DL87
X16477 CAA34498 P04792
X54079 CAA38016 P04792
CR407614 CAG28542 P04792
CR536489 CAG38728 P04792

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSPB1 NP_001531 M.musculus Hspb1 15507 Gene Info NP_038588 85
R.norvegicus Hspb1 24471   NP_114176 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta