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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. YKT6, YKT6 v-SNARE homolog (S. cerevisiae)
Sequence ID:NM_006555
Entrez Gene ID:10652
Ensembl ID:ENSG00000106636

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 44240734 - 44251879

NM_006555 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12614424057744240837
2623444424416644244248
3454454424598344246083
4465504424698644247090
5516164424773144247796
6177184425062144250722
71927654425184544253891

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989381Full LengthBC007319YKT6 v-SNARE homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006546  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006555 NP_006546 O15498 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
U95735 AAB81131 O15498
AF091079 AAC72948 Q9UES0
BC007319 AAH07319 O15498
BT007078 AAP35741 O15498
DQ890653 ABM81579  
DQ893833 ABM84759  
AK223488 BAD97208 O15498
AK312622 BAG35508 A4D2J0
AK299158 BAG61206 B4DR94
AB451317 BAG70131 B5BU81
AB451447 BAG70261 B5BU81
CR456989 CAG33270 O15498
CR542008 CAG46805 O15498

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens YKT6 NP_006546 R.norvegicus Ykt6 64351   NP_113880 95
M.musculus Ykt6 56418 Gene Info NP_062635 93
A.gambiae AgaP_AGAP000392 1271856   XP_310711 63
D.melanogaster Ykt6 31706   NP_572423 62
C.elegans synaptobrevin 176031   NP_498605 57
S.pombe ykt6 2539873   NP_596561 55
A.thaliana YKT61 835918   NP_001154785 48
S.cerevisiae YKT6 853638   NP_012725 47
N.crassa NCU08973 3875158   XP_959001 45
A.thaliana ATYKT62 835930   NP_200626 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)