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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. UBC, ubiquitin C
Sequence ID:NM_021009
RefSeqGene ID:NG_027722
Entrez Gene ID:7316
Ensembl ID:ENSG00000150991

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 125396193 - 125399197

NM_021009 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
312157125396193125398319
21582602125399132125399576

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4076286Full LengthBC039193ubiquitin C
2821375IncompleteBC000449ubiquitin C
2822684IncompleteBC080583ubiquitin C
3030313IncompleteBC008955ubiquitin C
5284302IncompleteBC093445ubiquitin C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066289  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021009 NP_066289   ubiquitin
Trigger_N

Related Sequences

 
mRNAGenPeptSwissProt
M17597 AAA36787 P0CG48
M26880 AAA36789 P0CG48
BC008955 AAH08955 Q96H31
BC014880 AAH14880 Q96C32
BC039193 AAH39193 P0CG48
BC080583 AAH80583 Q66K58
AY732488 AAV33127 Q5UGI3
AY819759 AAV68344 Q5PY61
AB009010 BAA23632 P0CG48
AK056939 BAB71316 Q96MH4
AB209782 BAD93019 Q59EM9
AK291539 BAF84228 A8K674
AL117514 CAB55973 Q9UFQ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBC NP_066289 A.gambiae AgaP_AGAP002599 1273370   XP_312337 100
D.melanogaster Ubi-p63E 38456   NP_995994 100
R.norvegicus Ubc 50522   NP_059010 100
M.musculus Ubc 22190 Gene Info NP_062613 100
C.elegans ubq-1 175840   NP_741157 98
A.thaliana UBQ8 820137   NP_566357 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)