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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC22A16, solute carrier family 22 (organic cation/carnitine transporter), member 16
Sequence ID:NM_033125
Entrez Gene ID:85413
Ensembl ID:ENSG00000004809

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q22.1|6q21-q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 110745953 - 110797407

NM_033125 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14395110745906110746287
396495110752373110752472
496605110757054110757163
606733110759922110760049
7341265110763446110763977
12661383110768075110768192
13841863110777740110778219
18641983110797724110797843

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4838011Full LengthBC047565solute carrier family 22 (organic cation/carnitine transporter), member 16
4509827IncompleteBC012014solute carrier family 22 (organic cation/carnitine transporter), member 16
5179269IncompleteBC037247solute carrier family 22 (organic cation/carnitine transporter), member 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_149116  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033125 NP_149116 Q86VW1 MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
BC012014 AAH12014 Q96ER0
BC047565 AAH47565 Q86VW1
AF268892 AAK58593 Q86VW1
AY145502 AAN52928 Q86VW1
JF432782 ADZ15999  
AK057306 BAB71419 Q86VW1
AB055798 BAC23062 Q86VW1
AK304546 BAG65342 B4E330

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC22A16 NP_149116 M.musculus Slc22a16 70840 Gene Info NP_081848 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)