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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ACBD3, acyl-CoA binding domain containing 3
Sequence ID:NM_022735
RefSeqGene ID:NG_028985
Entrez Gene ID:64746
Ensembl ID:ENSG00000182827

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 226332379 - 226374431

NM_022735 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
192159226332381226334521
21602444226340035226340319
24452631226342347226342533
26322806226346884226347058
28072965226349231226349389
29663106226352489226352629
31073248226353559226353700
32493581226374090226374422

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4813993Full LengthBC060792acyl-Coenzyme A binding domain containing 3
5259930Full LengthBC045533acyl-Coenzyme A binding domain containing 3
3858463IncompleteBC034563acyl-Coenzyme A binding domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073572  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022735 NP_073572 Q9H3P7 EMP24_GP25L

Related Sequences

 
mRNAGenPeptSwissProt
AF020762 AAB97675 O43466
BC034563 AAH34563 Q9H3P7
BC045533 AAH45533 Q9H3P7
BC060792 AAH60792 Q9H3P7
AY150218 AAN60219 Q9H3P7
AK025520 BAB15159 Q9H3P7
AB043587 BAB20592 Q9H3P7
AK314468 BAG37076 Q9H3P7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ACBD3 NP_073572 M.musculus Acbd3 170760 Gene Info NP_573488 90
R.norvegicus Acbd3 289312   NP_878263 89
A.gambiae AgaP_AGAP003185 1273857   XP_312883 49
C.elegans Y41E3.7 178416   NP_001041025 49
D.melanogaster CG14232 32983   NP_608348 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)