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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDE2, SDE2 telomere maintenance homolog (S. pombe)
Sequence ID:NM_152608
Entrez Gene ID:163859
Ensembl ID:ENSG00000143751

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 226172888 - 226187023

NM_152608 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
222842226170403226173223
28433335226175596226176088
33363456226178943226179063
34573626226180098226180267
36273738226180591226180702
37393856226182966226183083
38574029226186893226187065

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5261192Full LengthBC071563chromosome 1 open reading frame 55

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152608 NP_689821 Q6IQ49  

Related Sequences

 
mRNAGenPeptSwissProt
BC071563 AAH71563 Q6IQ49
AK092701 BAC03952 Q6IQ49
AK127780 BAC87130 Q6IQ49
AK291008 BAF83697 Q6IQ49

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1orf55 NP_689821 M.musculus BC031781 208768 Gene Info NP_666055 70
R.norvegicus RGD1305572 289315   NP_001020141 67
A.thaliana AT3G06455 819822   NP_850523 44
A.gambiae AgaP_AGAP001314 1281863   XP_321833 43
D.melanogaster CG5986 192506   NP_651207 42
C.elegans F53F4.14 179852   NP_506378 35
A.thaliana AT4G01000 826414   NP_192009 33