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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VARS, valyl-tRNA synthetase
Sequence ID:NM_006295
RefSeqGene ID:NG_028229
Entrez Gene ID:7407
Ensembl ID:ENSG00000204394

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31745298 - 31763522

 Exon Info From UCSC:
NM_006295

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3529215Full LengthBC012808valyl-tRNA synthetase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006286  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_006295 NP_006286 P26640 EC 6.1.1.9 GST_C
tRNA-synt_1
GST_N
Anticodon_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M98326 AAA81332 P26640 EC 6.1.1.9
BC012808 AAH12808 P26640 EC 6.1.1.9
AK300033 BAG61844 B4DT32  
AK302762 BAG63973 B4DZ61  
X59303 CAA41990 P26640 EC 6.1.1.9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VARS NP_006286 M.musculus Vars 22321 Gene Info NP_035820 94
R.norvegicus Vars 25009   NP_445744 93
D.melanogaster Aats-val 45783   NP_524838 61
A.gambiae AgaP_AGAP010420 1272628   XP_311528 60
C.elegans vrs-2 173224   NP_493377 54
S.pombe vrs1 2540197   NP_595435 54
S.cerevisiae VAS1 852986   NP_011608 50
A.thaliana TWN2 838023   NP_172913 49
N.crassa NCU01965 3880494   XP_964329 48
P.falciparum PF14_0589 812171   XP_001348763 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)