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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-F, major histocompatibility complex, class I, F
Sequence ID:NM_001098478
NM_001098479
NM_018950
RefSeqGene ID:NG_012009
Entrez Gene ID:3134
Ensembl ID:ENSG00000204642

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 29691210 - 29708131

 Exon Info From UCSC:
NM_001098478
NM_001098479
NM_018950

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5496696Full LengthBC062991major histocompatibility complex, class I, F
4039990IncompleteBC009260major histocompatibility complex, class I, F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061823  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001098478 NP_001091948    
NM_001098479 NP_001091949    
NM_018950 NP_061823 P30511
Q5SPT7
MHC_I
MHC_I_C
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
BC009260 AAH09260 P30511
BC062991 AAH62991 P30511
AY221102 AAO34407 Q861F0
Q861E9
AY216682 AAO37689 Q861F0
Q861E9
AY253269 AAO86773 P30511
AY253270 AAO86774 P30511
AY253271 AAO86775 P30511
DQ367723 ABD38924 P30511
GQ891552 ACX50639 D0EV57
AK125274 BAC86108 Q6ZUW0
AK096962 BAG53400 B3KUD8
AK298704 BAG60861 B4DQ99
AK300090 BAG61893 B4DT81
AK302420 BAG63725 B4DYG3
AK303670 BAG64668 B4E156
AK301488 BAH13496 B7Z760

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-F NP_001091949 M.musculus H2-M3 14991 Gene Info NP_038847 66
R.norvegicus RT1-M3-1 24747   NP_075210 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)