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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TTC1, Tetratricopeptide repeat domain 1
Sequence ID:NM_003314
Entrez Gene ID:7265
Ensembl ID:ENSG00000113312

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 159488415 - 159492549

NM_003314 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121159436179159436199
22380159437506159437864
381441159462146159462206
442554159463697159463809
555591159470139159470175
592740159476520159476668
741795159478135159478189
7961406159491938159492548

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3446109Full LengthBC000942tetratricopeptide repeat domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003305  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003314 NP_003305 Q99614 TPR_1

Related Sequences

 
mRNAGenPeptSwissProt
U46570 AAB36871 Q99614
BC000942 AAH00942 Q99614
DQ890993 ABM81919  
DQ894171 ABM85097  
AK222641 BAD96361 Q53HD9
AK222984 BAD96704 Q53GE7
AK315262 BAG37679 Q99614

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TTC1 NP_003305 R.norvegicus Ttc1 287208   NP_001005529 85
M.musculus Ttc1 66827 Gene Info NP_598556 84
D.melanogaster CG14894 41993   NP_650543 51
A.gambiae AgaP_AGAP003336 1275012   XP_314232 50
A.thaliana AT4G30480 829171   NP_194777 40
P.falciparum PFL2015w 811455   XP_001350807 37
C.elegans C34B2.5 172965   NP_492795 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)