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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C5orf4, chromosome 5 open reading frame 4
Sequence ID:NM_016348
NM_032385
Entrez Gene ID:10826
Ensembl ID:ENSG00000170271

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31-q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 154198051 - 154201086

Transcript StartTranscript EndChromosomal Start Chromosomal End
31981154198053154200031
19822148154200819154200985
21492254154202031154202136
22552460154202946154203151
24612582154210360154210481
25832686154214184154214287
26872778154214402154214493
27792826154217690154217737
28272997154230042154230212

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2906244Full LengthBC007216chromosome 5 open reading frame 4
3838106IncompleteBC004506chromosome 5 open reading frame 4

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032385 NP_115761 Q96IV6  

Related Sequences

 
mRNAGenPeptSwissProt
AF159165 AAF22611 Q9UHK3
BC004506 AAH04506 Q96IV6
BC007216 AAH07216 Q96IV6
AK295546 BAG58453 B4DIE1
AK300938 BAG62567 B4DV55

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C5orf4 NP_115761 R.norvegicus LOC691221 691221   XP_001077260 77
A.gambiae AgaP_AGAP000091 1272180   XP_311061 49
D.melanogaster CG1998 32300   NP_572887 47
C.elegans F49E12.10 186061   NP_495764 39
C.elegans F49E12.9 174339   NP_495763 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)