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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SERPINB6, serpin peptidase inhibitor, clade B (ovalbumin), member 6
Sequence ID:NM_001195291
NM_001271822
NM_001271823
NM_001271824
NM_001271825
NM_004568
RefSeqGene ID:NG_027692
Entrez Gene ID:5269
Ensembl ID:ENSG00000124570

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
DEAFNESS, AUTOSOMAL RECESSIVE 91 

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 2948546 - 2959877

Transcript StartTranscript EndChromosomal Start Chromosomal End
2156029483932948932
56171629491472949302
71785929532772953419
86097729548252954942
978112429557572955903
1125129929594012959575
1300166529717242972089

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051381Full LengthBC001394serpin peptidase inhibitor, clade B (ovalbumin), member 6
30563105Full LengthBC098564serpin peptidase inhibitor, clade B (ovalbumin), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195291 NP_001182220    
NM_001271822 NP_001258751    
NM_001271823 NP_001258752    
NM_001271824 NP_001258753    
NM_001271825 NP_001258754    
NM_004568 NP_004559 P35237 Serpin

Related Sequences

 
mRNAGenPeptSwissProt
BC001394 AAH01394 P35237
BC098564 AAH98564 P35237
AF116727 AAO15303 Q8IXH2
DQ895367 ABM86293  
EU176348 ABW03799  
AB209563 BAD92800 P35237
AK314578 BAG37155 P35237
Z22658 CAA80373 P35237
BX538343 CAD98106 P35237

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SERPINB6 NP_001182220 M.musculus Serpinb6a 20719 Gene Info NP_001157589 77
R.norvegicus Serpinb6 291085   NP_954516 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)