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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC30A1, solute carrier family 30 (zinc transporter), member 1
Sequence ID:NM_021194
Entrez Gene ID:7779
Ensembl ID:ENSG00000170385

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 211748732 - 211751954

NM_021194 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
171267211748380211749630
12682034211751332211752098

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40117054Full LengthBC121015solute carrier family 30 (zinc transporter), member 1
40117055Full LengthBC121016solute carrier family 30 (zinc transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067017  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021194 NP_067017 Q9Y6M5 Cation_efflux

Related Sequences

 
mRNAGenPeptSwissProt
BC121015 AAI21016 Q9Y6M5
BC121016 AAI21017 Q9Y6M5
AF364518 AAK50854 Q96KD7
AB451467 BAG70281 Q9Y6M5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC30A1 NP_067017 R.norvegicus Slc30a1 58976   NP_074044 87
M.musculus Slc30a1 22782 Gene Info NP_033605 86
D.melanogaster ZnT63C 38407   NP_728857 50
A.gambiae AgaP_AGAP005918 1276586   XP_315949 46
C.elegans cdf-1 180923   NP_509095 40
S.cerevisiae COT1 854494   NP_014961 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)