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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VDAC1, voltage-dependent anion channel 1
Sequence ID:NM_003374
NR_036624
NR_036625
RefSeqGene ID:NG_027817
Entrez Gene ID:7416
Ensembl ID:ENSG00000213585

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 133307606 - 133340824

NM_003374 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1947133307606133308552
9481005133309481133309538
10061156133311561133311711
11571384133316419133316646
13851437133326545133326597
14381590133326692133326844
15911640133327996133328045
16411710133328636133328705
17111806133340337133340432

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4332199Full LengthBC008482voltage-dependent anion channel 1
6023095Full LengthBC071168voltage-dependent anion channel 1
30395350Full LengthBC090042voltage-dependent anion channel 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003365  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003374 NP_003365 P21796 Porin_3

Related Sequences

 
mRNAGenPeptSwissProt
L06132 AAA61272 P21796
BC008482 AAH08482 P21796
BC071168 AAH71168 P21796
BC090042 AAH90042 P21796
DQ893183 ABM84109  
DQ896492 ABM87491  
AK095989 BAG53187 B3KTS5
AK122953 BAG53816 P21796
AK293639 BAG57094 B4DEI3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VDAC1 NP_003365 M.musculus Vdac1 22333 Gene Info NP_035824 99
R.norvegicus Vdac1 83529   NP_112643 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)