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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMGA1, high mobility group AT-hook 1
Sequence ID:NM_002131
NM_145899
NM_145901
NM_145902
NM_145903
NM_145905
NM_145904
RefSeqGene ID:NG_029020
Entrez Gene ID:3159
Ensembl ID:ENSG00000137309

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
DIABETES MELLITUS, NON-INSULIN-DEPENDENTABCC8
AKT2
CDKAL1
ENPP1
GCGR
GCK
GPD2
HNF1A
HNF1B
HNF4A
IGF2BP2
IL6
IRS1
IRS2
KCNJ11
LIPC
MAPK8IP1
MTNR1B
NEUROD1
NEUROD1
NEUROD1
PAX4
PDX1
PPARG
PTPN1
RETN
SLC2A4
SLC30A8
TCF7L2
VEGFA
WFS1
WFS1

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 34205077 - 34212974

 Exon Info From UCSC:
NM_002131
NM_145899
NM_145901
NM_145902
NM_145903
NM_145905

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3605116Full LengthBC004924high mobility group AT-hook 1
4110270Full LengthBC067083high mobility group AT-hook 1
4308914Full LengthBC008832high mobility group AT-hook 1
4651720Full LengthBC071863high mobility group AT-hook 1
4866014Full LengthBC015789high mobility group AT-hook 1
5399570Full LengthBC063434high mobility group AT-hook 1
6083428Full LengthBC071864high mobility group AT-hook 1
4844539IncompleteBC015662high mobility group AT-hook 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002122  NP_665912  NP_665906  NP_665908  NP_665909  NP_665910  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002131 NP_002122 Q5T6U8 AT_hook
NM_145899 NP_665906 P17096 AT_hook
NM_145901 NP_665908 P17096 AT_hook
NM_145902 NP_665909 Q5T6U8 AT_hook
NM_145903 NP_665910 Q5T6U8 AT_hook
NM_145905 NP_665912 Q5T6U8 AT_hook

Related Sequences

 
mRNAGenPeptSwissProt
M23619 AAA35998 P17096
M23614 AAA88072 P17096
M23615 AAA88073 P17096
Q5T6U8
M23616 AAA88074 P17096
Q5T6U8
M23617 AAA88075 P17096
Q5T6U8
M23618 AAA88076 P17096
AF176039 AAD53889 P17096
BC004924 AAH04924 P17096
Q5T6U8
BC008832 AAH08832 P17096
BC015789 AAH15789 Q5T6U8
BC063434 AAH63434 P17096
BC067083 AAH67083 P17096
BC071863 AAH71863 Q6IPL9
BC071864 AAH71864 P17096
BT006774 AAP35420 Q5T6U8
DQ893097 ABM84023  
EU176767 ABW03568  
AK130027 BAC85280 Q6ZP45
AK301434 BAG62962 B4DWA0
X14957 CAA33080 P17096
X14958 CAA33081 P17096
Q5T6U8

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)