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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMD2, proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
Sequence ID:NM_002808
Entrez Gene ID:5708
Ensembl ID:ENSG00000175166

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q27.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 184017039 - 184026836

 Exon Info From UCSC:
NM_002808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822191Full LengthBC002368proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
2905429Full LengthBC002997proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
4131391Full LengthBC007897proteasome (prosome, macropain) 26S subunit, non-ATPase, 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002799  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002808 NP_002799 Q13200 PC_rep

Related Sequences

 
mRNAGenPeptSwissProt
U18247 AAA57339 Q13041
U12596 AAA87705 Q13200
BC002368 AAH02368 Q13200
BC002997 AAH02997 Q13200
BC007897 AAH07897 Q13200
BT009736 AAP88738 Q13200
D78151 BAA11226 Q13200
AB209843 BAD93080 Q59EG8
AK297256 BAG59734 B4DM22
AK301759 BAG63219 B4DX07
AK302177 BAG63543 B4DXY1
X86446 CAA60167 Q13200
AL162014 CAB82366 Q9NSM5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD2 NP_002799 M.musculus Psmd2 21762 Gene Info NP_598862 99
R.norvegicus Psmd2 287984   NP_001026809 99
A.gambiae AgaP_AGAP002481 1273478   XP_563695 71
D.melanogaster Rpn1 40174   NP_649158 63
C.elegans rpn-1 177455   NP_501064 56
A.thaliana RPN1B 828964   NP_194576 53
A.thaliana RPN1A 816580   NP_565477 53
N.crassa NCU07721 3878119   XP_961971 52
S.pombe mts4 2541268   NP_596171 50
S.cerevisiae RPN1 856422   NP_011892 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)