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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GFM1, G elongation factor, mitochondrial 1
Sequence ID:NM_024996
RefSeqGene ID:NG_008441
Entrez Gene ID:85476
Ensembl ID:ENSG00000168827

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 158362316 - 158410360

 Exon Info From UCSC:
NM_024996

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5574223Full LengthBC049210G elongation factor, mitochondrial 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079272  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024996 NP_079272 Q96RP9 GTP_EFTU
EFG_C
GTP_EFTU_D2
EFG_IV

Related Sequences

 
mRNAGenPeptSwissProt
BC049210 AAH49210 Q96RP9
AF367998 AAK53402 Q96RP9
AF309777 AAK58877 Q96RP9
AK022724 BAB14205 Q9H9M0
AK315031 BAG37516 Q96RP9
AK092293 BAG52523 Q96RP9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GFM1 NP_079272 M.musculus Gfm1 28030 Gene Info NP_613057 91
R.norvegicus Gfm1 114017   NP_446077 86
D.melanogaster CG4567 34004   NP_609105 68
A.gambiae EFGM_ANOGA 1279146   XP_318822 67
S.cerevisiae MEF1 850758   NP_013170 58
A.thaliana AT1G45332 841097   NP_175135 57
C.elegans F29C12.4 174956   NP_496787 57
A.thaliana AT2G45030 819110   NP_182029 57
N.crassa NCU02955 3881505   XP_965342 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)