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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. RPN1, ribophorin I
Sequence ID:NM_002950
Entrez Gene ID:6184
Ensembl ID:ENSG00000163902

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 128338816 - 128369692

NM_002950 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3461167Full LengthBC010839ribophorin I
3609303IncompleteBC007995ribophorin I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002941  

Protein Infomation

NM_002950 NP_002941 P04843 EC Ribophorin_I

Related Sequences

BC007995 AAH07995 Q96HX3  
BC010839 AAH10839 P04843 EC
JF432331 ADZ15548    
AK223595 BAD97315 Q53EP4  
AK312369 BAG35287 P04843 EC
AK296905 BAG59461 B4DL99  
AK297941 BAG60257 B4DNJ5  
AK297513 BAH12600 B7Z4L4  
Y00281 CAA68392 P04843 EC
CR456742 CAG33023 Q6IBR0  
CR749284 CAH18139 P04843 EC

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens RPN1 NP_002941 M.musculus Rpn1 103963 Gene Info NP_598694 95
A.gambiae AgaP_AGAP010174 1279594   XP_319348 53
D.melanogaster CG33303 2768916   NP_995680 48
C.elegans glycotransferase 177456   NP_501065 43
A.thaliana AT1G76400 843972   NP_177766 36
N.crassa NCU02541 3881806   XP_965672 33
S.cerevisiae OST1 853455   NP_012532 29
S.pombe SPAC27F1.07 2541636   NP_594536 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)