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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSTA, cystatin A (stefin A)
Sequence ID:NM_005213
RefSeqGene ID:NG_027995
Entrez Gene ID:1475
Ensembl ID:ENSG00000121552

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 122044094 - 122060517

NM_005213 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1195122044010122044204
196297122056393122056494
298825122060285122060812

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4063525Full LengthBC010379cystatin A (stefin A)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005204  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005213 NP_005204 Q6IB90
P01040
Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
M27784 AAA72785 P01040
BC010379 AAH10379 Q6IB90
P01040
AK291308 BAF83997 Q6IB90
X05978 CAA29398 Q6IB90
P01040
CR456914 CAG33195 Q6IB90
P01040

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSTA NP_005204 M.musculus Csta 209294 Gene Info NP_001028411 64
R.norvegicus Csta 288067   NP_001099346 63
M.musculus Gm5483 433016 Gene Info NP_001076016 60
M.musculus 2010005H15Rik 76770 Gene Info NP_084009 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)