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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TFG, TRK-fused gene
Sequence ID:NM_001007565
NM_001195478
NM_001195479
NM_006070
RefSeqGene ID:NG_027821
Entrez Gene ID:10342
Ensembl ID:ENSG00000114354

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CHONDROSARCOMA, EXTRASKELETAL MYXOIDNR4A3
TAF15

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 100432633 - 100467807

 Exon Info From UCSC:
NM_001007565
NM_006070

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2962943Full LengthBC009241TRK-fused gene
3507440Full LengthBC001483TRK-fused gene
4555507Full LengthBC023599TRK-fused gene
5458899Full LengthBC041600TRK-fused gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006061  NP_001007566  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007565 NP_001007566   PB1
NM_001195478 NP_001182407    
NM_001195479 NP_001182408    
NM_006070 NP_006061 Q92734 PB1

Related Sequences

 
mRNAGenPeptSwissProt
BC001483 AAH01483 Q92734
BC009241 AAH09241 Q92734
BC023599 AAH23599 Q92734
BC041600 AAH41600 Q05BK6
BT007428 AAP36096 Q92734
DQ892194 ABM83120  
DQ895389 ABM86315  
AB097040 BAC77393 Q7Z427
AB097041 BAC77394 Q7Z426
AK093456 BAG52721 Q92734
AB731569 BAM48926 K0J6K2
AB731570 BAM48927 K0J5S8
Y07968 CAA69264 Q92734
CR456781 CAG33062 Q92734

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TFG NP_006061 M.musculus Tfg 21787 Gene Info NP_062652 95
R.norvegicus Tfg 360709   NP_001012144 95
C.elegans tfg-1 173277   NP_493462 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)