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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LRRC58, Leucine rich repeat containing 58
Sequence ID:NM_001099678
Entrez Gene ID:116064
Ensembl ID:ENSG00000163428

Database Links

UniGeneEntrez GeneEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 120044177 - 120047197

NM_001099678 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16680120043575120050254
66816958120053708120053985
69597087120054671120054799
70887683120067590120068185

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4525041IncompleteBC013757leucine rich repeat containing 58

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001099678 NP_001093148 Q96CX6  

Related Sequences

 
mRNAGenPeptSwissProt
BC013757 AAH13757 Q96CX6
AM393236 CAL38114 Q96CX6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRRC58 NP_001093148 M.musculus Lrrc58 320184 Gene Info NP_796067 95
R.norvegicus Lrrc58 303919   XP_221433 94
A.gambiae AgaP_AGAP004458 1274604   XP_313752 51
C.elegans Y42G9A.3 175865   NP_001022864 50
D.melanogaster CG32687 31980   NP_727428 48