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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ALS2CL, ALS2 C-terminal like
Sequence ID:NM_001190707
NM_147129
NM_182775
NR_033815
Entrez Gene ID:259173
Ensembl ID:ENSG00000178038

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 46710678 - 46735191

 Exon Info From UCSC:
NM_001190707
NM_147129
NM_182775

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069252Full LengthBC172558ALS2 C-terminal like
5445552IncompleteBC042906ALS2 C-terminal like
6573619IncompleteBC075825ALS2 C-terminal like
6575435IncompleteBC061883ALS2 C-terminal like
100063124BC156525ALS2 C-terminal like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_877576  NP_667340  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190707 NP_001177636    
NM_147129 NP_667340 Q60I27 VPS9
MORN
NM_182775 NP_877576   VPS9

Related Sequences

 
mRNAGenPeptSwissProt
BC042906 AAH42906 Q60I27
BC061883 AAH61883 Q60I27
BC075825 AAH75825 Q60I27
BC109233 AAI09234 Q60I27
BC156525 AAI56526  
BC172558 AAI72558  
AK074118 BAB84944 Q8TEK5
AK092455 BAC03895 Q60I27
AK093844 BAC04237 Q60I27
AK126505 BAC86572 Q60I27
AK131270 BAD18448 Q60I27
AK131273 BAD18450 Q60I27
AB107015 BAD51817 Q60I27
CR627258 CAH10367 Q60I27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ALS2CL NP_001177636 R.norvegicus Als2cl 316017   XP_002730023 83
M.musculus Als2cl 235633 Gene Info NP_001139531 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)