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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. COL18A1, collagen, type XVIII, alpha 1
Sequence ID:NM_030582
NM_130445
NM_130444
RefSeqGene ID:NG_011903
Entrez Gene ID:80781
Ensembl ID:ENSG00000182871

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
KNOBLOCH SYNDROME, TYPE 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 46875402 - 46933634

 Exon Info From UCSC:
NM_030582
NM_130445
NM_130444

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6181818Full LengthBC063833collagen, type XVIII, alpha 1
4425380IncompleteBC033715collagen, type XVIII, alpha 1
4994464IncompleteBC023005collagen, type XVIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_569712  NP_085059  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030582 NP_085059   Collagen
DUF959
Endostatin
NM_130445 NP_569712   Collagen
Endostatin

Related Sequences

 
mRNAGenPeptSwissProt
L22548 AAA51864 P39060
AF018081 AAC39658 P39060
AF018082 AAC39659 P39060
AF184060 AAF01310 P39060
BC033715 AAH33715 P39060
BC063833 AAH63833 P39060
AF333247 AAK50626 P39060
AF416592 AAL37720 P39060

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL18A1 NP_085059 M.musculus Col18a1 12822 Gene Info NP_001103461 76
R.norvegicus Col18a1 85251   XP_241632 76
A.gambiae AgaP_AGAP006516 1277113   XP_316546 48
D.melanogaster mp 38769   NP_001163358 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)