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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. F11R, F11 receptor
Sequence ID:NM_016946
Entrez Gene ID:50848
Ensembl ID:ENSG00000158769

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.2-q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 160967890 - 160990925

NM_016946 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
23696160965001160968695
36973745160968832160968880
37463758160969185160969197
37593866160969429160969536
38673969160969665160969767
39704172160969935160970137
41734319160970420160970566
43204427160970809160970916
44284496160971074160971142
44974830160990799160991132

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2990019Full LengthBC001533F11 receptor
3634113IncompleteBC038219F11 receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058642  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016946 NP_058642 Q6FIB4
Q9Y624
ig
V-set

Related Sequences

 
mRNAGenPeptSwissProt
AF154005 AAD43794 Q9Y5B2
AF172398 AAD48877 Q6FIB4
Q9Y624
AF207907 AAF22829 Q6FIB4
Q9Y624
BC001533 AAH01533 Q6FIB4
Q9Y624
AY358896 AAQ89255 Q6FIB4
Q9Y624
BT020103 AAV38906 Q6FIB4
Q9Y624
DQ892228 ABM83154  
DQ895428 ABM86354  
EU831732 ACE86566  
EU831648 ACE87248  
AK075152 BAC11436 Q6FIB4
Q9Y624
AK299487 BAH13047 B7Z5W1
AK304412 BAH14177 B7Z941
AL136649 CAB66584 Q6FIB4
Q9Y624
CR533512 CAG38543 Q6FIB4
Q9Y624

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens F11R NP_058642 R.norvegicus F11r 116479   NP_446248 72
M.musculus F11r 16456 Gene Info NP_766235 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)