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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF20, PHD finger protein 20
Sequence ID:NM_016436
Entrez Gene ID:51230
Ensembl ID:ENSG00000025293

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.22-q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 34359958 - 34501240

 Exon Info From UCSC:
NM_016436

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40148074Full LengthBC150178PHD finger protein 20
3848747IncompleteBC016948PHD finger protein 20
3957484IncompleteBC006415PHD finger protein 20
4791792IncompleteBC093405PHD finger protein 20
4875346IncompleteBC080598PHD finger protein 20
5808885IncompleteBC048210PHD finger protein 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057520  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016436 NP_057520 Q9BVI0 PHD

Related Sequences

 
mRNAGenPeptSwissProt
AF220416 AAF34184 Q9BVI0
AF258787 AAG49888 Q9BVI0
BC048210 AAH48210 Q9BVI0
BC080598 AAH80598 Q9BVI0
BC093405 AAH93405 Q9BVI0
BC150178 AAI50179 Q9BVI0
AY027523 AAK13046 Q9BVI0
AF348207 AAK19748 Q9BVI0
AY134747 AAN08621 Q7Z5E2
AK314503 BAG37103 Q9BVI0
AK097498 BAG53476 B3KUL4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF20 NP_057520 M.musculus Phf20 228829 Gene Info NP_766262 89
R.norvegicus Phf20 311575   NP_001101265 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)