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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ACSS2, acyl-CoA synthetase short-chain family member 2
Sequence ID:NM_001076552
NM_001242393
NM_018677
NM_139274
RefSeqGene ID:NG_011520
Entrez Gene ID:55902
Ensembl ID:ENSG00000131069

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 33464448 - 33515017

 Exon Info From UCSC:
NM_001076552
NM_018677

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4643236Full LengthBC012172acyl-CoA synthetase short-chain family member 2
5798672Full LengthBC098422acyl-CoA synthetase short-chain family member 2
4131932IncompleteBC010141acyl-CoA synthetase short-chain family member 2
5219243IncompleteBC073846acyl-CoA synthetase short-chain family member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061147  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001076552 NP_001070020      
NM_001242393 NP_001229322      
NM_018677 NP_061147 Q9NR19 EC 6.2.1.1 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF263614 AAF75064 Q9NR19 EC 6.2.1.1
BC010141 AAH10141 Q96FY7  
BC012172 AAH12172 Q9NR19 EC 6.2.1.1
BC073846 AAH73846 Q6DKJ3  
BC098422 AAH98422 Q4G0E8  
AK022608 BAB14127 Q9H9U4  
AK092281 BAC03849 Q8N238  
AK098026 BAG53564 B3KUV2  
AK293634 BAG57090 B4DEH9  
CR749716 CAH18485 Q68CU9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ACSS2 NP_001070020 R.norvegicus Acss2 311569   NP_001101263 94
M.musculus Acss2 60525 Gene Info NP_062785 94
A.gambiae AgaP_AGAP006569 1277153   XP_316594 64
D.melanogaster AcCoAS 40348   NP_730611 64
A.thaliana ACS 833655   NP_001031974 60
C.elegans C36A4.9 175500   NP_001021206 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta