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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BCAN, brevican
Sequence ID:NM_021948
NM_198427
RefSeqGene ID:NG_030013
Entrez Gene ID:63827
Ensembl ID:ENSG00000132692

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 156616683 - 156629026

 Exon Info From UCSC:
NM_021948
NM_198427

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4154474Full LengthBC009117brevican
4932894Full LengthBC022938brevican
5309663Full LengthBC027971brevican
3832861IncompleteBC010117brevican

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068767  NP_940819  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021948 NP_068767 Q96GW7 EGF
Lectin_C
Sushi
Xlink
V-set
NM_198427 NP_940819   Xlink
V-set

Related Sequences

 
mRNAGenPeptSwissProt
AY007241 AAG01897 Q8IWX2
AF228710 AAG23134 Q96GW7
AF229053 AAG23135 Q96GW7
BC009117 AAH09117 Q96GW7
BC022938 AAH22938 Q96GW7
BC027971 AAH27971 Q96GW7
AY358372 AAQ88738 Q96GW7
AB209570 BAD92807 Q59F90
AK289759 BAF82448 A8K144
AL137504 CAB70776 Q9NT67

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BCAN NP_068767 R.norvegicus Bcan 25393   NP_001028837 85
M.musculus Bcan 12032 Gene Info NP_031555 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)