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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMG5, smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Sequence ID:NM_015327
Entrez Gene ID:23381
Ensembl ID:ENSG00000198952

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 156219016 - 156252604

 Exon Info From UCSC:
NM_015327

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4824487Full LengthBC038296Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
3349328IncompleteBC007292Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
3528110IncompleteBC007453Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015327 NP_056142 Q9UPR3  

Related Sequences

 
mRNAGenPeptSwissProt
BC007453 AAH07453 Q9UPR3
BC038296 AAH38296 Q9UPR3
AY168922 AAO17582 Q9UPR3
AY336728 AAQ84301 Q9UPR3
AB029012 BAA83041 Q9UPR3
AK027486 BAB55147 Q96SX4
AB085691 BAC53623 Q9UPR3
AL137738 CAH56374 Q9UPR3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMG5 NP_056142 M.musculus Smg5 229512 Gene Info NP_839977 93
R.norvegicus Smg5 681012   XP_001059906 93
D.melanogaster Smg5 34804   NP_609685 31
A.gambiae AgaP_AGAP008181 1277789   XP_317286 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)