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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PDE6D, Phosphodiesterase 6D, cGMP-specific, rod, delta
Sequence ID:NM_002601
Entrez Gene ID:5147
Ensembl ID:ENSG00000156973

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q35-q36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 232597146 - 232645974

NM_002601 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
23619232597146232597742
620725232601896232602001
726851232602722232602847
852940232603809232603897
9411140232645774232645973

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3638562Full LengthBC007831phosphodiesterase 6D, cGMP-specific, rod, delta
3509221IncompleteBC001054phosphodiesterase 6D, cGMP-specific, rod, delta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002592  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002601 NP_002592 Q6IB24
O43924
GMP_PDE_delta

Related Sequences

 
mRNAGenPeptSwissProt
AF022912 AAB87872 Q6IB24
O43924
BC007831 AAH07831 Q6IB24
O43924
BT007278 AAP35942 Q6IB24
O43924
DQ893223 ABM84149  
DQ896553 ABM87552  
AJ001626 CAA04880 O43924
CR456980 CAG33261 Q6IB24
O43924

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDE6D NP_002592 M.musculus Pde6d 18582 Gene Info NP_032827 98
R.norvegicus Pde6d 363272   NP_001102276 98
C.elegans pdl-1 191741   NP_495490 70
A.gambiae PDE6D_ANOGA 1280884   XP_320754 67
D.melanogaster PrBP 34196   NP_609246 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)