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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCG2, secretogranin II
Sequence ID:NM_003469
RefSeqGene ID:NG_027998
Entrez Gene ID:7857
Ensembl ID:ENSG00000171951

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q35-q36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 224461727 - 224467078

NM_003469 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
172371224461659224464013
23722490224467002224467120

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4820104Full LengthBC022509secretogranin II (chromogranin C)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003460  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003469 NP_003460 P13521 Granin

Related Sequences

 
mRNAGenPeptSwissProt
M25756 AAA36607 P13521
BC022509 AAH22509 P13521
AK312452 BAG35359 P13521
AK298828 BAG60958 B4DQJ6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCG2 NP_003460 M.musculus Scg2 20254 Gene Info NP_033155 82
R.norvegicus Scg2 24765   NP_073160 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)