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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CYP27A1, cytochrome P450, family 27, subfamily A, polypeptide 1
Sequence ID:NM_000784
RefSeqGene ID:NG_007959
Entrez Gene ID:1593
Ensembl ID:ENSG00000135929

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q33-qterMitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 219646471 - 219680011

NM_000784 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1689219646471219647159
690880219674299219674489
8811080219676944219677143
10811278219677274219677471
12791451219677646219677818
14521618219678743219678909
16191697219679102219679180
16981910219679267219679479
19112292219679633219680014

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5240515Full LengthBC051851cytochrome P450, family 27, subfamily A, polypeptide 1
5760376Full LengthBC040430cytochrome P450, family 27, subfamily A, polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000775  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000784 NP_000775 Q02318 EC 1.14.13.15 p450

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M62401 AAA52142 Q02318 EC 1.14.13.15
BC040430 AAH40430 Q02318 EC 1.14.13.15
BC051851 AAH51851 Q02318 EC 1.14.13.15
AY178622 AAO21126 Q02318 EC 1.14.13.15
AK290418 BAF83107 Q02318 EC 1.14.13.15
X59812 CAA42481 Q02318 EC 1.14.13.15

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CYP27A1 NP_000775 R.norvegicus Cyp27a1 301517   NP_849178 74
M.musculus Cyp27a1 104086 Gene Info NP_077226 73
D.melanogaster Cyp49a1 36105   NP_610588 34
A.gambiae AgaP_AGAP005774 1276443   XP_315789 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)