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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EFNA1, ephrin-A1
Sequence ID:NM_004428
NM_182685
Entrez Gene ID:1942
Ensembl ID:ENSG00000169242

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 155099935 - 155107332

 Exon Info From UCSC:
NM_004428
NM_182685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5402648Full LengthBC032698ephrin-A1
30376031Full LengthBC095432ephrin-A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_872626  NP_004419  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004428 NP_004419 P20827 Ephrin
NM_182685 NP_872626   Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
M57730 AAA58388 P20827
BC032698 AAH32698 P20827
BC095432 AAH95432 P20827
DQ890722 ABM81648  
DQ893900 ABM84826  
AK289589 BAF82278 A8K0M4
AK313117 BAG35938 B2R7U1
CR457416 CAG33697 P20827

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EFNA1 NP_004419 R.norvegicus Efna1 94268   NP_446051 87
M.musculus Efna1 13636 Gene Info NP_034237 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)