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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EFNA3, ephrin-A3
Sequence ID:NM_004952
Entrez Gene ID:1944
Ensembl ID:ENSG00000143590

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 155051363 - 155059311

NM_004952 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1198155051347155051544
199512155057566155057879
513578155058352155058417
579656155058603155058680
6571774155058888155060005

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4397263Full LengthBC017722ephrin-A3
5732044Full LengthBC110406ephrin-A3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004943  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004952 NP_004943 P52797 Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
L37360 AAA52368 P52797
U14187 AAC50078 P52797
BC017722 AAH17722 P52797
BC110406 AAI10407 P52797
DQ891668 ABM82594  
DQ894854 ABM85780  
AK296030 BAG58798 B4DJD6
AK316248 BAH14619 B7ZAD3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EFNA3 NP_004943 M.musculus Efna3 13638 Gene Info NP_034238 97
R.norvegicus Efna3 170901   XP_574979 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)