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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SATB2, SATB homeobox 2
Sequence ID:NM_001172509
NM_001172517
NM_015265
RefSeqGene ID:NG_016976
Entrez Gene ID:23314
Ensembl ID:ENSG00000119042

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CLEFT PALATE AND MENTAL RETARDATIONUBB

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 200134223 - 200325201

 Exon Info From UCSC:
NM_001172509
NM_001172517
NM_015265

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40007829Full LengthBC103492SATB homeobox 2
40007830Full LengthBC098136SATB homeobox 2
40007831Full LengthBC103500SATB homeobox 2
40007832Full LengthBC099723SATB homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056080  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172509 NP_001165980    
NM_001172517 NP_001165988    
NM_015265 NP_056080 Q9UPW6 CUT

Related Sequences

 
mRNAGenPeptSwissProt
BC098136 AAH98136 Q9UPW6
BC099723 AAH99723 Q9UPW6
BC103492 AAI03493 Q3ZB87
BC103500 AAI03501 Q9UPW6
EU446695 ABZ92224  
AB028957 BAA82986 Q9UPW6
AK025127 BAB15073 Q9H726
AB209376 BAD92613 Q59FT3
AK291463 BAF84152 Q9UPW6
AK056638 BAG51771 B3KPQ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SATB2 NP_001165980 M.musculus Satb2 212712 Gene Info NP_631885 100
R.norvegicus Satb2 501145   NP_001102776 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)