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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMYD1, SET and MYND domain containing 1
Sequence ID:NM_198274
Entrez Gene ID:150572
Ensembl ID:ENSG00000115593

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 88407911 - 88410374

NM_198274 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11398836738188367519
1403168838383488384010
3175308838738088387593
5316618839053088390660
6627008839303588393073
7018908839611388396302
8919838840257688402668
98411478840584388406006
114813168840788988408057
131743448840987288412899

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991907Full LengthBC126191SET and MYND domain containing 1
4293901IncompleteBC017915SET and MYND domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_938015  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198274 NP_938015 Q8NB12 SET
zf-MYND

Related Sequences

 
mRNAGenPeptSwissProt
BC126191 AAI26192 Q8NB12
AY518933 AAT44535 Q5GJ33
AY518934 AAT44536 Q5GJ32
EU832002 ACE86665  
EU831908 ACE87349  
HQ258264 ADR83018  
AK091724 BAC03732 Q8NB12
BX647878 CAI46077 Q5HYE8
AL832035 CAI46139 Q8NB12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMYD1 NP_938015 R.norvegicus Smyd1 297333   NP_001100065 95
M.musculus Smyd1 12180 Gene Info NP_033892 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)