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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF13, PHD finger protein 13
Sequence ID:NM_153812
Entrez Gene ID:148479
Ensembl ID:ENSG00000116273

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 6674063 - 6681792

NM_153812 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
141066737556674164
41151266768166676917
513104766798626680396
1048366966814706684091

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5266750Full LengthBC038516PHD finger protein 13
3641223IncompleteBC048202PHD finger protein 13
3878461IncompleteBC032792PHD finger protein 13
4122428IncompleteBC007931PHD finger protein 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_722519  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153812 NP_722519 Q86YI8 PHD

Related Sequences

 
mRNAGenPeptSwissProt
BC032792 AAH32792 Q86YI8
BC038516 AAH38516 Q86YI8
AY069975 AAL58478 Q86YI8
HQ448030 ADQ32511  
AB209544 BAD92781 Q86YI8
AK315110 BAG37568 Q86YI8
AK097715 BAG53519 Q86YI8
AL121733 CAB57324 Q86YI8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF13 NP_722519 R.norvegicus Phf13 313742   NP_001101465 94
M.musculus Phf13 230936 Gene Info NP_766293 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)