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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM54, tripartite motif containing 54
Sequence ID:NM_032546
NM_187841
Entrez Gene ID:57159
Ensembl ID:ENSG00000138100

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 27505599 - 27529879

 Exon Info From UCSC:
NM_032546
NM_187841

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40147443Full LengthBC141807tripartite motif-containing 54

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115935  NP_912730  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032546 NP_115935   zf-C3HC4
zf-B_box
NM_187841 NP_912730 Q9BYV2 zf-C3HC4
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
BC141807 AAI41808 Q9BYV2
AK300699 BAG62380 B4DUL8
AJ291714 CAC32841 Q9BYV2
AJ291714 CAC32842 Q9BYV2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM54 NP_912730 R.norvegicus Trim54 362708   NP_001013235 96
M.musculus Trim54 58522 Gene Info NP_067422 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)