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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EIF3F, Eukaryotic translation initiation factor 3, subunit F
Sequence ID:NM_003754
Entrez Gene ID:8665
Ensembl ID:ENSG00000175390

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 8018915 - 8021037

NM_003754 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139780088668009262
39846880133278013397
46954880136308013709
54968680144338014570
68777880159728016063
77991580165288016664
916102980168008016913
1030125480174918017715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2819946Full LengthBC000490eukaryotic translation initiation factor 3, subunit F
6424468IncompleteBC073753eukaryotic translation initiation factor 3, subunit F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003745  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_003754 NP_003745 O00303 EC 3.4.19.12 Mov34

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U94855 AAD03467 O00303 EC 3.4.19.12
BC000490 AAH00490 O00303 EC 3.4.19.12
BT006894 AAP35540 O00303 EC 3.4.19.12
DQ890766 ABM81692    
HQ448263 ADQ32743    
AK095574 BAC04577 O00303 EC 3.4.19.12
AK289637 BAF82326 O00303 EC 3.4.19.12
AK291354 BAF84043 O00303 EC 3.4.19.12
AK093511 BAG52733 B3KSH1  
AK293826 BAG57230 B4DEW9  
AK297621 BAG59997 B4DMT5  
CR456959 CAG33240 O00303 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EIF3F NP_003745 M.musculus Eif3f 66085 Gene Info NP_079620 94
A.gambiae EIF3F_ANOGA 1273028   XP_311967 52
D.melanogaster CG9769 40587   NP_649489 50
A.thaliana EIF2 818587   NP_181528 40
C.elegans eif-3.F 174478   NP_495988 38
S.pombe SPBC4C3.07 2540868   NP_596298 38
N.crassa NCU01021 3877808   XP_961633 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)