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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. S100A1, S100 calcium binding protein A1
Sequence ID:NM_006271
Entrez Gene ID:6271
Ensembl ID:ENSG00000160678

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cartilage, cerebrum, embryonic tissue, endocrine, eye, fetus, heart, kidney, lung, mammary gland, muscle, nervous, ovary, placenta, pooled tissue, prostate, retina, skin, testis, thyroid, uncharacterized tissue
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 153602997 - 153604315

NM_006271 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1100153600872153600971
101254153602984153603137
255594153604173153604512

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3543900Full LengthBC014392S100 calcium binding protein A1
4544435IncompleteBC094843S100 calcium binding protein A1
4861318IncompleteBC072006S100 calcium binding protein A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006262  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006271 NP_006262 P23297 efhand
S_100

Related Sequences

 
mRNAGenPeptSwissProt
BC014392 AAH14392 P23297
BT006938 AAP35584 P23297
AK312152 BAG35086 P23297
AB451316 BAG70130 P23297
AB451446 BAG70260 P23297
X58079 CAA41107 P23297

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens S100A1 NP_006262 M.musculus S100a1 20193 Gene Info NP_035439 94
R.norvegicus S100a1 295214   NP_001007637 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)