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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRPF31, PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)
Sequence ID:NM_015629
RefSeqGene ID:NG_009759
Entrez Gene ID:26121
Ensembl ID:ENSG00000105618

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.42Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 54619180 - 54635150

 Exon Info From UCSC:
NM_015629

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125940Full LengthBC117389PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056444  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015629 NP_056444 Q8WWY3 Nop
NOSIC

Related Sequences

 
mRNAGenPeptSwissProt
AF308303 AAG48270 Q8WWY3
BC117389 AAI17390 Q8WWY3
AY040822 AAK77986 Q8WWY3
HQ258269 ADR83023  
AK098547 BAC05329 Q8WWY3
AK301709 BAG63180 B4DWW8
AB593024 BAJ83978 F1T0A4
AB593025 BAJ83979 F1T0A5
AL050369 CAB43677 Q8WWY3
AM392866 CAL37744  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRPF31 NP_056444 R.norvegicus Prpf31 292536   NP_001099689 99
M.musculus Prpf31 68988 Gene Info NP_081604 99
A.gambiae AgaP_AGAP012142 1280535   XP_320385 62
D.melanogaster Prp31 39655   NP_648756 62
C.elegans Y110A7A.8 172146   NP_491527 47
A.thaliana emb1220 842312   NP_564754 47
S.pombe prp31 2540045   NP_595294 42
N.crassa NCU02716 3881266   XP_965101 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)