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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL18, ribosomal protein L18
Sequence ID:NM_000979
NM_001270490
NR_073022
RefSeqGene ID:NG_029867
Entrez Gene ID:6141
Ensembl ID:ENSG00000063177

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 49118587 - 49122433

Transcript StartTranscript EndChromosomal Start Chromosomal End
81244911858749118703
1251944911913349119202
1953184911933549119458
3194174911998249120080
4185254912057249120679
5266124912104749121133
6136484912239749122432

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820119Full LengthBC000374ribosomal protein L18
3878799Full LengthBC009708ribosomal protein L18
5261251Full LengthBC021743ribosomal protein L18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000970  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000979 NP_000970 Q07020 Ribosomal_L18e
NM_001270490 NP_001257419    

Related Sequences

 
mRNAGenPeptSwissProt
L11566 AAA16329 Q07020
BC000374 AAH00374 Q07020
BC009708 AAH09708 Q07020
BC021743 AAH21743 Q07020
DQ403032 ABD77165 Q0QEW2
DQ891451 ABM82377  
DQ894630 ABM85556  
D28461 BAA05827  
AK293386 BAG56896 B4DDY5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL18 NP_000970 R.norvegicus Rpl18 81766   NP_112364 97
M.musculus Rpl18 19899 Gene Info NP_033103 96
D.melanogaster RpL18 38794   NP_648091 70
A.gambiae RL18_ANOGA 1269649   XP_001687888 68
C.elegans rpl-18 178342   NP_502655 66
A.thaliana AT5G27850 832848   NP_198137 65
A.thaliana RPL18 819725   NP_187210 65
N.crassa NCU03988 3872720   XP_956573 62
S.pombe rpl1802 3361377   NP_001018228 61
P.falciparum MAL13P1.209 813765   XP_001350135 60
S.pombe rpl1801 2539678   NP_596397 60
S.cerevisiae RPL18B 855415   NP_014098 56
S.cerevisiae RPL18A 854029   NP_014521 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)